Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Gm14722-201ENSMUST00000118943 689 ntBASIC17.05■□□□□ 0.32
Hmgb1P63158 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.05■□□□□ 0.32
Hmgb1P63158 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Hmgb1P63158 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Hmgb1P63158 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb1P63158 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb1P63158 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb1P63158 Gm15165-201ENSMUST00000118140 502 ntBASIC17.03■□□□□ 0.32
Hmgb1P63158 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.03■□□□□ 0.32
Hmgb1P63158 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.03■□□□□ 0.32
Hmgb1P63158 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.03■□□□□ 0.32
Hmgb1P63158 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Hmgb1P63158 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb1P63158 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb1P63158 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb1P63158 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.02■□□□□ 0.32
Hmgb1P63158 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Gm27704-201ENSMUST00000185094 107 ntBASIC17.02■□□□□ 0.32
Hmgb1P63158 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Gm19164-201ENSMUST00000210667 640 ntBASIC17.02■□□□□ 0.32
Hmgb1P63158 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb1P63158 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Hmgb1P63158 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb1P63158 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb1P63158 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb1P63158 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.02■□□□□ 0.31
Hmgb1P63158 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb1P63158 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Hmgb1P63158 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb1P63158 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC17.01■□□□□ 0.31
Hmgb1P63158 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.01■□□□□ 0.31
Hmgb1P63158 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms