Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Cdx2P43241 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Cdx2P43241 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC14.68□□□□□ -0.06
Cdx2P43241 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.67□□□□□ -0.06
Cdx2P43241 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Cdx2P43241 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.67□□□□□ -0.06
Cdx2P43241 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.67□□□□□ -0.06
Cdx2P43241 Gm5779-201ENSMUST00000218467 910 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Gm15635-204ENSMUST00000208024 2539 ntBASIC14.67□□□□□ -0.06
Cdx2P43241 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdx2P43241 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm25287-201ENSMUST00000103846 110 ntBASIC14.66□□□□□ -0.06
Cdx2P43241 Gm22918-201ENSMUST00000103855 110 ntBASIC14.66□□□□□ -0.06
Cdx2P43241 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.66□□□□□ -0.06
Cdx2P43241 Gm14722-201ENSMUST00000118943 689 ntBASIC14.66□□□□□ -0.06
Cdx2P43241 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.66□□□□□ -0.06
Cdx2P43241 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.66□□□□□ -0.06
Cdx2P43241 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Cdx2P43241 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdx2P43241 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.65□□□□□ -0.06
Cdx2P43241 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.65□□□□□ -0.06
Cdx2P43241 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdx2P43241 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdx2P43241 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdx2P43241 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Cdx2P43241 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Cdx2P43241 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Gm12428-201ENSMUST00000119844 727 ntBASIC14.65□□□□□ -0.06
Cdx2P43241 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Cdx2P43241 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.65□□□□□ -0.06
Cdx2P43241 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.65□□□□□ -0.06
Cdx2P43241 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdx2P43241 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdx2P43241 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.65□□□□□ -0.06
Cdx2P43241 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Cdx2P43241 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Cdx2P43241 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx2P43241 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx2P43241 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx2P43241 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx2P43241 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms