Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.37■□□□□ 0.85
Col18a1P39061 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Col18a1P39061 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
Col18a1P39061 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Col18a1P39061 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Ldha-ps-201ENSMUST00000119390 995 ntBASIC20.36■□□□□ 0.85
Col18a1P39061 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Gm27701-201ENSMUST00000184498 110 ntBASIC20.36■□□□□ 0.85
Col18a1P39061 Gm9229-201ENSMUST00000222777 126 ntBASIC20.36■□□□□ 0.85
Col18a1P39061 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC20.36■□□□□ 0.85
Col18a1P39061 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col18a1P39061 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Col18a1P39061 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Col18a1P39061 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.35■□□□□ 0.85
Col18a1P39061 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col18a1P39061 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 AC155286.1-201ENSMUST00000218632 448 ntBASIC20.34■□□□□ 0.85
Col18a1P39061 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Gm9200-201ENSMUST00000118513 1354 ntBASIC20.34■□□□□ 0.85
Col18a1P39061 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col18a1P39061 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC20.34■□□□□ 0.85
Col18a1P39061 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col18a1P39061 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC20.33■□□□□ 0.85
Col18a1P39061 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC20.33■□□□□ 0.85
Col18a1P39061 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col18a1P39061 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col18a1P39061 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC20.33■□□□□ 0.84
Col18a1P39061 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col18a1P39061 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC20.33■□□□□ 0.84
Col18a1P39061 Gm13392-201ENSMUST00000117708 150 ntBASIC20.33■□□□□ 0.84
Col18a1P39061 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC20.33■□□□□ 0.84
Col18a1P39061 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Col18a1P39061 Mir6392-201ENSMUST00000184924 108 ntBASIC20.33■□□□□ 0.84
Col18a1P39061 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC20.33■□□□□ 0.84
Col18a1P39061 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Col18a1P39061 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col18a1P39061 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC20.32■□□□□ 0.84
Col18a1P39061 Gm12957-201ENSMUST00000117835 377 ntBASIC20.32■□□□□ 0.84
Col18a1P39061 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC20.32■□□□□ 0.84
Col18a1P39061 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC20.32■□□□□ 0.84
Col18a1P39061 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Col18a1P39061 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col18a1P39061 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col18a1P39061 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col18a1P39061 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col18a1P39061 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col18a1P39061 Gm4984-201ENSMUST00000115987 360 ntBASIC20.31■□□□□ 0.84
Col18a1P39061 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col18a1P39061 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC20.31■□□□□ 0.84
Col18a1P39061 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Col18a1P39061 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms