Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Gm14859-201ENSMUST00000117752 357 ntBASIC12.56□□□□□ -0.4
Cdx1P18111 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Cdx1P18111 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC12.56□□□□□ -0.4
Cdx1P18111 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
Cdx1P18111 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdx1P18111 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdx1P18111 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Cdx1P18111 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Cdx1P18111 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC12.56□□□□□ -0.4
Cdx1P18111 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cdx1P18111 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.55□□□□□ -0.4
Cdx1P18111 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.55□□□□□ -0.4
Cdx1P18111 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Cdx1P18111 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Gm24841-201ENSMUST00000158676 357 ntBASIC12.55□□□□□ -0.4
Cdx1P18111 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Cdx1P18111 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Cdx1P18111 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Cdx1P18111 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Cdx1P18111 Gm7638-201ENSMUST00000121348 967 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 Gm12134-201ENSMUST00000122109 520 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Cdx1P18111 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Gm29791-202ENSMUST00000207888 369 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 AC107711.5-202ENSMUST00000226429 702 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Cdx1P18111 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.54□□□□□ -0.4
Cdx1P18111 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC12.54□□□□□ -0.4
Cdx1P18111 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Cdx1P18111 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Cdx1P18111 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.54□□□□□ -0.4
Cdx1P18111 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Cdx1P18111 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Cdx1P18111 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.53□□□□□ -0.4
Cdx1P18111 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Cdx1P18111 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms