Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Scn11aQ9R053 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.23■□□□□ 0.51
Scn11aQ9R053 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 CT010506.4-201ENSMUST00000225457 351 ntBASIC18.23■□□□□ 0.51
Scn11aQ9R053 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.23■□□□□ 0.51
Scn11aQ9R053 Dancr-204ENSMUST00000132389 2347 ntBASIC18.23■□□□□ 0.51
Scn11aQ9R053 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Gm14026-201ENSMUST00000120625 1789 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 AC130829.1-201ENSMUST00000221548 494 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Rbfox2-208ENSMUST00000227930 1218 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Gm27437-201ENSMUST00000183429 107 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Gm27920-201ENSMUST00000183953 96 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Scn11aQ9R053 Gm2423-201ENSMUST00000074863 733 ntBASIC18.22■□□□□ 0.51
Scn11aQ9R053 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.22■□□□□ 0.51
Scn11aQ9R053 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.21■□□□□ 0.51
Scn11aQ9R053 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Mir449b-201ENSMUST00000104833 80 ntBASIC18.21■□□□□ 0.51
Scn11aQ9R053 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Scn11aQ9R053 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Gm29541-201ENSMUST00000191351 678 ntBASIC18.2■□□□□ 0.5
Scn11aQ9R053 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Scn11aQ9R053 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.19■□□□□ 0.5
Scn11aQ9R053 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Scn11aQ9R053 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC18.19■□□□□ 0.5
Scn11aQ9R053 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Scn11aQ9R053 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Scn11aQ9R053 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.19■□□□□ 0.5
Scn11aQ9R053 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.19■□□□□ 0.5
Scn11aQ9R053 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Scn11aQ9R053 App-207ENSMUST00000227737 2827 ntBASIC18.19■□□□□ 0.5
Scn11aQ9R053 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms