Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.41□□□□□ -0.1
Cdc40Q9DC48 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdc40Q9DC48 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Gm13418-201ENSMUST00000119097 944 ntBASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Gm4535-201ENSMUST00000182274 558 ntBASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Gm10355-201ENSMUST00000097146 517 ntBASIC14.4□□□□□ -0.1
Cdc40Q9DC48 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdc40Q9DC48 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gm6257-201ENSMUST00000163864 910 ntBASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdc40Q9DC48 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms