Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Gm29518-201ENSMUST00000190858 372 ntBASIC14.16□□□□□ -0.14
Lims1Q99JW4 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.16□□□□□ -0.14
Lims1Q99JW4 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lims1Q99JW4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gm10459-201ENSMUST00000202708 1155 ntBASIC14.15□□□□□ -0.14
Lims1Q99JW4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Lims1Q99JW4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm23634-201ENSMUST00000175071 91 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm8825-201ENSMUST00000182565 998 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm4518-201ENSMUST00000182638 718 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.14□□□□□ -0.15
Lims1Q99JW4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Lims1Q99JW4 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lims1Q99JW4 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms