Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ushbp1Q8R370 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gm15467-201ENSMUST00000120582 445 ntBASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gm6736-201ENSMUST00000166583 948 ntBASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gm25745-201ENSMUST00000174945 133 ntBASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Ushbp1Q8R370 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Gm43575-201ENSMUST00000196420 516 ntBASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Psmb5-202ENSMUST00000227257 622 ntBASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.36■□□□□ 0.37
Ushbp1Q8R370 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ushbp1Q8R370 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Gm15173-201ENSMUST00000122049 433 ntBASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ushbp1Q8R370 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.35■□□□□ 0.37
Ushbp1Q8R370 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms