Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Syne4Q8CII8 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.52■□□□□ 0.4
Syne4Q8CII8 Gm27618-201ENSMUST00000183671 60 ntBASIC17.52■□□□□ 0.4
Syne4Q8CII8 AC166341.4-201ENSMUST00000220625 123 ntBASIC17.52■□□□□ 0.4
Syne4Q8CII8 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Syne4Q8CII8 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Syne4Q8CII8 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Syne4Q8CII8 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Syne4Q8CII8 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Syne4Q8CII8 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Syne4Q8CII8 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC17.5■□□□□ 0.39
Syne4Q8CII8 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.5■□□□□ 0.39
Syne4Q8CII8 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Gm17837-201ENSMUST00000186435 985 ntBASIC17.5■□□□□ 0.39
Syne4Q8CII8 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 AC160980.1-201ENSMUST00000224136 970 ntBASIC17.5■□□□□ 0.39
Syne4Q8CII8 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Syne4Q8CII8 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm6415-201ENSMUST00000118488 348 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm14722-201ENSMUST00000118943 689 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm15693-201ENSMUST00000120470 637 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.49■□□□□ 0.39
Syne4Q8CII8 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Syne4Q8CII8 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Gm27306-201ENSMUST00000183970 107 ntBASIC17.48■□□□□ 0.39
Syne4Q8CII8 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Syne4Q8CII8 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms