Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vps53Q8CCB4 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Gm5264-201ENSMUST00000190584 848 ntBASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vps53Q8CCB4 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Gm25745-201ENSMUST00000174945 133 ntBASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vps53Q8CCB4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gm11779-201ENSMUST00000118541 368 ntBASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Vps53Q8CCB4 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
Vps53Q8CCB4 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms