Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Gm15358-201ENSMUST00000119249 520 ntBASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Gm6089-201ENSMUST00000197666 938 ntBASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Grk6-207ENSMUST00000225925 2769 ntBASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Gm27646-201ENSMUST00000183989 110 ntBASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Upf3bQ3ULL6 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.59■□□□□ 0.25
Upf3bQ3ULL6 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3bQ3ULL6 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3bQ3ULL6 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3bQ3ULL6 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Upf3bQ3ULL6 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Upf3bQ3ULL6 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms