Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Gm15483-201ENSMUST00000120338 456 ntBASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Ddb1Q3U1J4 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ddb1Q3U1J4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 AC130829.1-201ENSMUST00000221548 494 ntBASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ddb1Q3U1J4 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gm3365-201ENSMUST00000216296 1480 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gm27838-201ENSMUST00000184829 128 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gm6473-201ENSMUST00000188572 1210 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gm43433-201ENSMUST00000196573 481 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Gm7669-201ENSMUST00000210184 1603 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddb1Q3U1J4 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm15222-202ENSMUST00000228667 1726 ntBASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm18766-201ENSMUST00000189811 808 ntBASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm7775-201ENSMUST00000218871 853 ntBASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Cdk7-205ENSMUST00000225990 1159 ntBASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms