Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Umpk-ps-201ENSMUST00000211897 827 ntBASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col28a1Q2UY11 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Gm11336-201ENSMUST00000118168 334 ntBASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col28a1Q2UY11 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gm6858-201ENSMUST00000208582 1468 ntBASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gm11355-201ENSMUST00000121120 306 ntBASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 AC132265.1-201ENSMUST00000219233 1665 ntBASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col28a1Q2UY11 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col28a1Q2UY11 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.08■□□□□ 0
Col28a1Q2UY11 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col28a1Q2UY11 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col28a1Q2UY11 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC15.08■□□□□ 0
Col28a1Q2UY11 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col28a1Q2UY11 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col28a1Q2UY11 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Col28a1Q2UY11 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms