Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC15.17■□□□□ 0.02
Col9a1Q05722 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
Col9a1Q05722 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Gm18737-201ENSMUST00000173594 937 ntBASIC15.17■□□□□ 0.02
Col9a1Q05722 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Gm20445-201ENSMUST00000061905 565 ntBASIC15.17■□□□□ 0.02
Col9a1Q05722 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Col9a1Q05722 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col9a1Q05722 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col9a1Q05722 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Gm12008-201ENSMUST00000117791 755 ntBASIC15.16■□□□□ 0.02
Col9a1Q05722 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC15.16■□□□□ 0.02
Col9a1Q05722 Mir6404-201ENSMUST00000183699 94 ntBASIC15.16■□□□□ 0.02
Col9a1Q05722 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.16■□□□□ 0.02
Col9a1Q05722 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC15.16■□□□□ 0.02
Col9a1Q05722 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC15.16■□□□□ 0.02
Col9a1Q05722 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col9a1Q05722 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Col9a1Q05722 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col9a1Q05722 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC15.15■□□□□ 0.02
Col9a1Q05722 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Snora78-201ENSMUST00000158630 128 ntBASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm22993-201ENSMUST00000175423 254 ntBASIC15.15■□□□□ 0.02
Col9a1Q05722 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm27227-201ENSMUST00000183413 633 ntTSL 3 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm29541-201ENSMUST00000191351 678 ntBASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm9728-201ENSMUST00000200197 1055 ntBASIC15.15■□□□□ 0.02
Col9a1Q05722 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.15■□□□□ 0.02
Col9a1Q05722 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col9a1Q05722 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm12390-201ENSMUST00000117897 397 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm27533-201ENSMUST00000183800 152 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm4857-201ENSMUST00000192718 785 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC15.14■□□□□ 0.01
Col9a1Q05722 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Gm18624-201ENSMUST00000220966 658 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 CT030657.3-201ENSMUST00000222707 1200 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col9a1Q05722 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.14■□□□□ 0.01
Col9a1Q05722 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Col9a1Q05722 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 318.9 ms