Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.12■□□□□ 0.33
Col6a1Q04857 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col6a1Q04857 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col6a1Q04857 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a1Q04857 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm5177-201ENSMUST00000183092 997 ntBASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Col6a1Q04857 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a1Q04857 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col6a1Q04857 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Col6a1Q04857 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gm8344-201ENSMUST00000119813 856 ntBASIC17.1■□□□□ 0.33
Col6a1Q04857 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC17.1■□□□□ 0.33
Col6a1Q04857 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.1■□□□□ 0.33
Col6a1Q04857 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gm9682-201ENSMUST00000197505 556 ntBASIC17.1■□□□□ 0.33
Col6a1Q04857 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Col6a1Q04857 AC124732.2-201ENSMUST00000221977 316 ntBASIC17.1■□□□□ 0.33
Col6a1Q04857 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC17.1■□□□□ 0.33
Col6a1Q04857 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.1■□□□□ 0.33
Col6a1Q04857 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a1Q04857 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col6a1Q04857 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Gm15358-201ENSMUST00000119249 520 ntBASIC17.09■□□□□ 0.33
Col6a1Q04857 Gm12428-201ENSMUST00000119844 727 ntBASIC17.09■□□□□ 0.33
Col6a1Q04857 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.09■□□□□ 0.33
Col6a1Q04857 Gm22175-201ENSMUST00000175007 78 ntBASIC17.09■□□□□ 0.33
Col6a1Q04857 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.09■□□□□ 0.33
Col6a1Q04857 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a1Q04857 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a1Q04857 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms