Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Lig3P97386 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Lig3P97386 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.93■□□□□ 0.3
Lig3P97386 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC16.93■□□□□ 0.3
Lig3P97386 Gm15920-201ENSMUST00000118998 402 ntBASIC16.93■□□□□ 0.3
Lig3P97386 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.93■□□□□ 0.3
Lig3P97386 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.93■□□□□ 0.3
Lig3P97386 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Gm44430-201ENSMUST00000203376 995 ntBASIC16.93■□□□□ 0.3
Lig3P97386 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Gm5186-201ENSMUST00000218781 920 ntBASIC16.93■□□□□ 0.3
Lig3P97386 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Lig3P97386 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.93■□□□□ 0.3
Lig3P97386 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC16.93■□□□□ 0.3
Lig3P97386 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Lig3P97386 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Lig3P97386 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Lig3P97386 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lig3P97386 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC16.92■□□□□ 0.3
Lig3P97386 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.92■□□□□ 0.3
Lig3P97386 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.92■□□□□ 0.3
Lig3P97386 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.92■□□□□ 0.3
Lig3P97386 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lig3P97386 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Gm25745-201ENSMUST00000174945 133 ntBASIC16.91■□□□□ 0.3
Lig3P97386 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.91■□□□□ 0.3
Lig3P97386 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.91■□□□□ 0.3
Lig3P97386 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Lig3P97386 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
Lig3P97386 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Lig3P97386 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Lig3P97386 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.9■□□□□ 0.3
Lig3P97386 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lig3P97386 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Lig3P97386 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lig3P97386 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms