Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Shmt1P50431 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.39■□□□□ 0.21
Shmt1P50431 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.39■□□□□ 0.21
Shmt1P50431 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.39■□□□□ 0.21
Shmt1P50431 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.39■□□□□ 0.21
Shmt1P50431 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.39■□□□□ 0.21
Shmt1P50431 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.39■□□□□ 0.21
Shmt1P50431 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Shmt1P50431 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Shmt1P50431 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Shmt1P50431 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.39■□□□□ 0.21
Shmt1P50431 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shmt1P50431 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.38■□□□□ 0.21
Shmt1P50431 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Gm11779-201ENSMUST00000118541 368 ntBASIC16.38■□□□□ 0.21
Shmt1P50431 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.38■□□□□ 0.21
Shmt1P50431 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.38■□□□□ 0.21
Shmt1P50431 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Shmt1P50431 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.38■□□□□ 0.21
Shmt1P50431 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shmt1P50431 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Shmt1P50431 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.37■□□□□ 0.21
Shmt1P50431 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.37■□□□□ 0.21
Shmt1P50431 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Shmt1P50431 Gm14140-201ENSMUST00000119999 995 ntBASIC16.37■□□□□ 0.21
Shmt1P50431 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
Shmt1P50431 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Shmt1P50431 Gm18489-201ENSMUST00000172565 551 ntBASIC16.37■□□□□ 0.21
Shmt1P50431 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.37■□□□□ 0.21
Shmt1P50431 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.37■□□□□ 0.21
Shmt1P50431 Gm43073-201ENSMUST00000198200 1189 ntBASIC16.37■□□□□ 0.21
Shmt1P50431 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.37■□□□□ 0.21
Shmt1P50431 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Shmt1P50431 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shmt1P50431 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shmt1P50431 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.36■□□□□ 0.21
Shmt1P50431 Gm27300-201ENSMUST00000184085 97 ntBASIC16.36■□□□□ 0.21
Shmt1P50431 Gm27335-201ENSMUST00000184758 97 ntBASIC16.36■□□□□ 0.21
Shmt1P50431 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms