Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Gm43352-201ENSMUST00000196419 3065 ntBASIC14.05□□□□□ -0.16
Rfx3P48381 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.05□□□□□ -0.16
Rfx3P48381 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.05□□□□□ -0.16
Rfx3P48381 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Rfx3P48381 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Rfx3P48381 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Rfx3P48381 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.05□□□□□ -0.16
Rfx3P48381 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Rfx3P48381 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.05□□□□□ -0.16
Rfx3P48381 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Rfx3P48381 BC037039-201ENSMUST00000192003 2205 ntBASIC14.05□□□□□ -0.16
Rfx3P48381 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.05□□□□□ -0.16
Rfx3P48381 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Rfx3P48381 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Rfx3P48381 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Rfx3P48381 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Rfx3P48381 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.04□□□□□ -0.16
Rfx3P48381 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Rfx3P48381 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Rfx3P48381 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Rfx3P48381 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Rfx3P48381 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Rfx3P48381 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.03□□□□□ -0.16
Rfx3P48381 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.03□□□□□ -0.16
Rfx3P48381 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Rfx3P48381 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Rfx3P48381 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Rfx3P48381 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Rfx3P48381 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Rfx3P48381 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Rfx3P48381 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.03□□□□□ -0.16
Rfx3P48381 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Rfx3P48381 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Rfx3P48381 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms