Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Iqck-206ENSMUST00000208658 2891 ntBASIC20.42■□□□□ 0.86
Col18a1P39061 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Gm15593-201ENSMUST00000122085 1008 ntBASIC20.42■□□□□ 0.86
Col18a1P39061 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC20.42■□□□□ 0.86
Col18a1P39061 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Col18a1P39061 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
Col18a1P39061 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col18a1P39061 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Col18a1P39061 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Col18a1P39061 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 AC149588.3-201ENSMUST00000227515 150 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Gm9797-201ENSMUST00000052902 613 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Col18a1P39061 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Col18a1P39061 Gm15806-201ENSMUST00000120696 955 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
Col18a1P39061 Gm28760-201ENSMUST00000185995 736 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Gm31326-201ENSMUST00000191856 1048 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC20.41■□□□□ 0.86
Col18a1P39061 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC20.41■□□□□ 0.86
Col18a1P39061 AC238811.3-201ENSMUST00000225422 709 ntBASIC20.41■□□□□ 0.86
Col18a1P39061 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col18a1P39061 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC20.4■□□□□ 0.86
Col18a1P39061 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 Gm12960-201ENSMUST00000120017 1066 ntBASIC20.4■□□□□ 0.86
Col18a1P39061 Gm7820-201ENSMUST00000121012 1052 ntBASIC20.4■□□□□ 0.86
Col18a1P39061 Gm7556-201ENSMUST00000201178 1084 ntBASIC20.4■□□□□ 0.86
Col18a1P39061 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col18a1P39061 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC20.4■□□□□ 0.86
Col18a1P39061 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC20.39■□□□□ 0.86
Col18a1P39061 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC20.39■□□□□ 0.86
Col18a1P39061 Gm6222-201ENSMUST00000120787 396 ntBASIC20.39■□□□□ 0.86
Col18a1P39061 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC20.39■□□□□ 0.86
Col18a1P39061 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col18a1P39061 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col18a1P39061 AC164565.1-201ENSMUST00000217520 1484 ntBASIC20.39■□□□□ 0.85
Col18a1P39061 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Col18a1P39061 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Gm27631-201ENSMUST00000184163 466 ntBASIC20.39■□□□□ 0.85
Col18a1P39061 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC20.39■□□□□ 0.85
Col18a1P39061 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col18a1P39061 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC20.38■□□□□ 0.85
Col18a1P39061 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC20.38■□□□□ 0.85
Col18a1P39061 Gm9002-201ENSMUST00000178437 499 ntBASIC20.38■□□□□ 0.85
Col18a1P39061 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Col18a1P39061 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Col18a1P39061 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
Col18a1P39061 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col18a1P39061 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC20.38■□□□□ 0.85
Col18a1P39061 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Col18a1P39061 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Col18a1P39061 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC20.37■□□□□ 0.85
Col18a1P39061 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Col18a1P39061 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col18a1P39061 Gm44729-201ENSMUST00000206759 2052 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms