Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RaraP11416 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.81■□□□□ 0.28
RaraP11416 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RaraP11416 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RaraP11416 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.81■□□□□ 0.28
RaraP11416 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RaraP11416 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RaraP11416 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RaraP11416 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
RaraP11416 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.8■□□□□ 0.28
RaraP11416 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
RaraP11416 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.8■□□□□ 0.28
RaraP11416 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RaraP11416 Gm27742-201ENSMUST00000184667 60 ntBASIC16.8■□□□□ 0.28
RaraP11416 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.8■□□□□ 0.28
RaraP11416 Gm44454-201ENSMUST00000198541 138 ntBASIC16.8■□□□□ 0.28
RaraP11416 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.8■□□□□ 0.28
RaraP11416 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
RaraP11416 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
RaraP11416 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RaraP11416 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC16.79■□□□□ 0.28
RaraP11416 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.79■□□□□ 0.28
RaraP11416 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.79■□□□□ 0.28
RaraP11416 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC16.79■□□□□ 0.28
RaraP11416 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.79■□□□□ 0.28
RaraP11416 Gm13034-201ENSMUST00000121342 3177 ntBASIC16.79■□□□□ 0.28
RaraP11416 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.79■□□□□ 0.28
RaraP11416 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RaraP11416 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RaraP11416 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RaraP11416 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RaraP11416 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
RaraP11416 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
RaraP11416 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.78■□□□□ 0.28
RaraP11416 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.78■□□□□ 0.28
RaraP11416 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RaraP11416 Grk6-207ENSMUST00000225925 2769 ntBASIC16.77■□□□□ 0.28
RaraP11416 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RaraP11416 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RaraP11416 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms