Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC18.02■□□□□ 0.48
Col1a1P11087 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Col1a1P11087 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
Col1a1P11087 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC18.02■□□□□ 0.48
Col1a1P11087 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 AC132863.2-201ENSMUST00000226643 799 ntBASIC18.02■□□□□ 0.48
Col1a1P11087 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Col1a1P11087 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col1a1P11087 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col1a1P11087 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Col1a1P11087 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Col1a1P11087 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC18.01■□□□□ 0.47
Col1a1P11087 CT010506.4-201ENSMUST00000225457 351 ntBASIC18.01■□□□□ 0.47
Col1a1P11087 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Col1a1P11087 Gm44729-201ENSMUST00000206759 2052 ntBASIC18.01■□□□□ 0.47
Col1a1P11087 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC18.01■□□□□ 0.47
Col1a1P11087 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col1a1P11087 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC18.01■□□□□ 0.47
Col1a1P11087 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18■□□□□ 0.47
Col1a1P11087 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC18■□□□□ 0.47
Col1a1P11087 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC18■□□□□ 0.47
Col1a1P11087 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC18■□□□□ 0.47
Col1a1P11087 Gm15483-201ENSMUST00000120338 456 ntBASIC18■□□□□ 0.47
Col1a1P11087 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC18■□□□□ 0.47
Col1a1P11087 Gm9063-201ENSMUST00000223299 582 ntBASIC18■□□□□ 0.47
Col1a1P11087 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Gm45293-201ENSMUST00000209754 1812 ntBASIC18■□□□□ 0.47
Col1a1P11087 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col1a1P11087 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Col1a1P11087 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.99■□□□□ 0.47
Col1a1P11087 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.99■□□□□ 0.47
Col1a1P11087 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.99■□□□□ 0.47
Col1a1P11087 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.99■□□□□ 0.47
Col1a1P11087 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Col1a1P11087 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Col1a1P11087 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col1a1P11087 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Col1a1P11087 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col1a1P11087 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms