Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
Vti1aO89116 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.73■□□□□ 0.27
Vti1aO89116 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.73■□□□□ 0.27
Vti1aO89116 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.73■□□□□ 0.27
Vti1aO89116 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.73■□□□□ 0.27
Vti1aO89116 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vti1aO89116 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Vti1aO89116 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Gm4995-201ENSMUST00000117247 432 ntBASIC16.72■□□□□ 0.27
Vti1aO89116 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.72■□□□□ 0.27
Vti1aO89116 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.72■□□□□ 0.27
Vti1aO89116 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
Vti1aO89116 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Gm27646-201ENSMUST00000183989 110 ntBASIC16.72■□□□□ 0.27
Vti1aO89116 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.72■□□□□ 0.27
Vti1aO89116 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vti1aO89116 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Vti1aO89116 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
Vti1aO89116 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.71■□□□□ 0.27
Vti1aO89116 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Vti1aO89116 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.71■□□□□ 0.27
Vti1aO89116 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Vti1aO89116 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.71■□□□□ 0.27
Vti1aO89116 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.71■□□□□ 0.27
Vti1aO89116 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.71■□□□□ 0.27
Vti1aO89116 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.71■□□□□ 0.27
Vti1aO89116 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.71■□□□□ 0.27
Vti1aO89116 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vti1aO89116 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vti1aO89116 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.7■□□□□ 0.26
Vti1aO89116 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Mir3113-201ENSMUST00000175478 76 ntBASIC16.7■□□□□ 0.26
Vti1aO89116 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Vti1aO89116 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.7■□□□□ 0.26
Vti1aO89116 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vti1aO89116 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vti1aO89116 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vti1aO89116 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms