Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
Shroom3Q9QXN0 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Shroom3Q9QXN0 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Shroom3Q9QXN0 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
Shroom3Q9QXN0 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Shroom3Q9QXN0 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Shroom3Q9QXN0 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Shroom3Q9QXN0 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Shroom3Q9QXN0 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Gm12366-201ENSMUST00000121722 873 ntBASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Gm5786-201ENSMUST00000085368 882 ntBASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Shroom3Q9QXN0 AC122317.2-201ENSMUST00000218708 1248 ntBASIC22.93■■□□□ 1.26
Shroom3Q9QXN0 Pkd1-207ENSMUST00000228550 1050 ntBASIC22.93■■□□□ 1.26
Shroom3Q9QXN0 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
Shroom3Q9QXN0 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Shroom3Q9QXN0 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Shroom3Q9QXN0 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Shroom3Q9QXN0 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Shroom3Q9QXN0 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Shroom3Q9QXN0 Scarna2-201ENSMUST00000157560 414 ntBASIC22.9■■□□□ 1.26
Shroom3Q9QXN0 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.9■■□□□ 1.26
Shroom3Q9QXN0 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Shroom3Q9QXN0 Gm11687-201ENSMUST00000118911 886 ntBASIC22.89■■□□□ 1.26
Shroom3Q9QXN0 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Shroom3Q9QXN0 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.89■■□□□ 1.25
Shroom3Q9QXN0 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC22.89■■□□□ 1.25
Shroom3Q9QXN0 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Shroom3Q9QXN0 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Gm9806-201ENSMUST00000051080 552 ntBASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Gm4799-201ENSMUST00000095396 657 ntBASIC22.87■■□□□ 1.25
Shroom3Q9QXN0 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Shroom3Q9QXN0 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Shroom3Q9QXN0 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Shroom3Q9QXN0 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Shroom3Q9QXN0 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 Gm16437-201ENSMUST00000025669 507 ntBASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Shroom3Q9QXN0 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Shroom3Q9QXN0 Mir3960-201ENSMUST00000198213 73 ntBASIC22.84■■□□□ 1.25
Shroom3Q9QXN0 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
Shroom3Q9QXN0 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Shroom3Q9QXN0 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Shroom3Q9QXN0 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC22.83■■□□□ 1.25
Shroom3Q9QXN0 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC22.83■■□□□ 1.24
Shroom3Q9QXN0 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Shroom3Q9QXN0 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.24
Shroom3Q9QXN0 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Shroom3Q9QXN0 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Shroom3Q9QXN0 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC22.82■■□□□ 1.24
Shroom3Q9QXN0 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Shroom3Q9QXN0 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
Shroom3Q9QXN0 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Shroom3Q9QXN0 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Shroom3Q9QXN0 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.8■■□□□ 1.24
Shroom3Q9QXN0 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Shroom3Q9QXN0 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Shroom3Q9QXN0 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Shroom3Q9QXN0 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Gm7332-201ENSMUST00000118351 454 ntBASIC22.78■■□□□ 1.24
Shroom3Q9QXN0 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Shroom3Q9QXN0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Shroom3Q9QXN0 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Shroom3Q9QXN0 Gm12818-201ENSMUST00000117562 1349 ntBASIC22.77■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms