Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Vps53Q8CCB4 Gm9806-201ENSMUST00000051080 552 ntBASIC26.28■■□□□ 1.8
Vps53Q8CCB4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Vps53Q8CCB4 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Vps53Q8CCB4 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Vps53Q8CCB4 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Vps53Q8CCB4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Vps53Q8CCB4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Vps53Q8CCB4 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Vps53Q8CCB4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Vps53Q8CCB4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
Vps53Q8CCB4 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Vps53Q8CCB4 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Gm12366-201ENSMUST00000121722 873 ntBASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Gm5786-201ENSMUST00000085368 882 ntBASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Gm4799-201ENSMUST00000095396 657 ntBASIC26.23■■□□□ 1.79
Vps53Q8CCB4 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC26.23■■□□□ 1.79
Vps53Q8CCB4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Vps53Q8CCB4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Vps53Q8CCB4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Gm16437-201ENSMUST00000025669 507 ntBASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Vps53Q8CCB4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps53Q8CCB4 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps53Q8CCB4 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC26.2■■□□□ 1.78
Vps53Q8CCB4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Vps53Q8CCB4 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.19■■□□□ 1.78
Vps53Q8CCB4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Vps53Q8CCB4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Vps53Q8CCB4 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Vps53Q8CCB4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC26.18■■□□□ 1.78
Vps53Q8CCB4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Vps53Q8CCB4 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC26.18■■□□□ 1.78
Vps53Q8CCB4 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Vps53Q8CCB4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Vps53Q8CCB4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Vps53Q8CCB4 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Vps53Q8CCB4 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.17■■□□□ 1.78
Vps53Q8CCB4 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Vps53Q8CCB4 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Vps53Q8CCB4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Vps53Q8CCB4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Mir3960-201ENSMUST00000198213 73 ntBASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Vps53Q8CCB4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Vps53Q8CCB4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.14■■□□□ 1.78
Vps53Q8CCB4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
Vps53Q8CCB4 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Vps53Q8CCB4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Vps53Q8CCB4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Vps53Q8CCB4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Vps53Q8CCB4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.12■■□□□ 1.77
Vps53Q8CCB4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Vps53Q8CCB4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Vps53Q8CCB4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Vps53Q8CCB4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Vps53Q8CCB4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC26.1■■□□□ 1.77
Vps53Q8CCB4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Vps53Q8CCB4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Vps53Q8CCB4 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Vps53Q8CCB4 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
Vps53Q8CCB4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Vps53Q8CCB4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Vps53Q8CCB4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC26.08■■□□□ 1.76
Vps53Q8CCB4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Vps53Q8CCB4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Vps53Q8CCB4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
Vps53Q8CCB4 Gm45364-201ENSMUST00000210883 159 ntBASIC26.05■■□□□ 1.76
Vps53Q8CCB4 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Vps53Q8CCB4 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Vps53Q8CCB4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps53Q8CCB4 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Vps53Q8CCB4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Vps53Q8CCB4 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
Vps53Q8CCB4 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Vps53Q8CCB4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
Vps53Q8CCB4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Vps53Q8CCB4 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 92.6 ms