Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.29■□□□□ 0.52
Scn11aQ9R053 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Fgf17-202ENSMUST00000227123 1336 ntBASIC18.28■□□□□ 0.52
Scn11aQ9R053 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 AC125206.2-201ENSMUST00000217454 574 ntBASIC18.28■□□□□ 0.52
Scn11aQ9R053 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn11aQ9R053 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Gm13823-201ENSMUST00000119930 345 ntBASIC18.27■□□□□ 0.52
Scn11aQ9R053 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn11aQ9R053 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC18.27■□□□□ 0.51
Scn11aQ9R053 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn11aQ9R053 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Gm25287-201ENSMUST00000103846 110 ntBASIC18.26■□□□□ 0.51
Scn11aQ9R053 Gm22918-201ENSMUST00000103855 110 ntBASIC18.26■□□□□ 0.51
Scn11aQ9R053 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Gm7653-201ENSMUST00000214567 508 ntBASIC18.26■□□□□ 0.51
Scn11aQ9R053 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.26■□□□□ 0.51
Scn11aQ9R053 AC131710.1-201ENSMUST00000228336 990 ntBASIC18.26■□□□□ 0.51
Scn11aQ9R053 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn11aQ9R053 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn11aQ9R053 Gm2810-201ENSMUST00000118681 990 ntBASIC18.25■□□□□ 0.51
Scn11aQ9R053 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms