Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Gm38241-201ENSMUST00000192641 898 ntBASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Gm7390-201ENSMUST00000212452 1216 ntBASIC17.52■□□□□ 0.4
Upf1Q9EPU0 AC150560.1-201ENSMUST00000227731 1187 ntBASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Upf1Q9EPU0 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf1Q9EPU0 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Upf1Q9EPU0 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Upf1Q9EPU0 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Ldha-ps-201ENSMUST00000119390 995 ntBASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Gm5356-201ENSMUST00000093326 615 ntBASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Upf1Q9EPU0 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Gm18056-201ENSMUST00000207670 568 ntBASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Gm18061-201ENSMUST00000208350 562 ntBASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Gm18063-201ENSMUST00000208529 568 ntBASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Gm18052-201ENSMUST00000208750 559 ntBASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Upf1Q9EPU0 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Gm27243-201ENSMUST00000183964 521 ntBASIC17.49■□□□□ 0.39
Upf1Q9EPU0 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Upf1Q9EPU0 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.48■□□□□ 0.39
Upf1Q9EPU0 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.47■□□□□ 0.39
Upf1Q9EPU0 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms