Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx56Q9D0R4 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx56Q9D0R4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx56Q9D0R4 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ddx56Q9D0R4 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ddx56Q9D0R4 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Gm14722-201ENSMUST00000118943 689 ntBASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Ddx56Q9D0R4 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms