Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.37■□□□□ 0.21
Clp1Q99LI9 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.37■□□□□ 0.21
Clp1Q99LI9 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Clp1Q99LI9 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm13216-201ENSMUST00000117145 591 ntBASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm12428-201ENSMUST00000119844 727 ntBASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm15693-201ENSMUST00000120470 637 ntBASIC16.36■□□□□ 0.21
Clp1Q99LI9 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Mir6977-201ENSMUST00000184960 64 ntBASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.36■□□□□ 0.21
Clp1Q99LI9 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Clp1Q99LI9 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.35■□□□□ 0.21
Clp1Q99LI9 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.35■□□□□ 0.21
Clp1Q99LI9 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Clp1Q99LI9 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.34■□□□□ 0.21
Clp1Q99LI9 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Gm5779-201ENSMUST00000218467 910 ntBASIC16.34■□□□□ 0.21
Clp1Q99LI9 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.34■□□□□ 0.21
Clp1Q99LI9 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.34■□□□□ 0.21
Clp1Q99LI9 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Clp1Q99LI9 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms