Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Sybu-209ENSMUST00000228639 4113 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm13884-201ENSMUST00000118103 829 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm13418-201ENSMUST00000119097 944 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm4535-201ENSMUST00000182274 558 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Rps4l-201ENSMUST00000071745 943 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm10355-201ENSMUST00000097146 517 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gm18856-201ENSMUST00000178096 1374 ntBASIC15.34■□□□□ 0.05
Ubp1Q811S7 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ubp1Q811S7 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Ubp1Q811S7 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ubp1Q811S7 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ubp1Q811S7 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC15.33■□□□□ 0.04
Ubp1Q811S7 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ubp1Q811S7 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.32■□□□□ 0.04
Ubp1Q811S7 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ubp1Q811S7 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubp1Q811S7 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC15.31■□□□□ 0.04
Ubp1Q811S7 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubp1Q811S7 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubp1Q811S7 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubp1Q811S7 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ubp1Q811S7 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms