Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Mir3113-201ENSMUST00000175478 76 ntBASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 AC174742.1-201ENSMUST00000218272 304 ntBASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ubfd1Q78JW9 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Gm2756-201ENSMUST00000195851 400 ntBASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Ntrk2-205ENSMUST00000224402 2284 ntBASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ubfd1Q78JW9 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Gm13337-201ENSMUST00000119183 1594 ntBASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ubfd1Q78JW9 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ubfd1Q78JW9 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms