Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Upf3aQ3ULJ3 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Gm2272-201ENSMUST00000194903 582 ntBASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Upf3aQ3ULJ3 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Upf3aQ3ULJ3 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Gm43125-201ENSMUST00000201724 730 ntBASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Upf3aQ3ULJ3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms