Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.42□□□□□ -0.26
Nkx3-1P97436 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Gm10576-201ENSMUST00000191927 825 ntBASIC13.42□□□□□ -0.26
Nkx3-1P97436 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Nkx3-1P97436 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm14701-201ENSMUST00000117156 348 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm11025-201ENSMUST00000140773 466 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm17968-201ENSMUST00000194902 784 ntBASIC13.41□□□□□ -0.26
Nkx3-1P97436 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Nkx3-1P97436 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.4□□□□□ -0.26
Nkx3-1P97436 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gm20628-201ENSMUST00000177363 3215 ntBASIC13.4□□□□□ -0.26
Nkx3-1P97436 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.4□□□□□ -0.26
Nkx3-1P97436 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gm13597-201ENSMUST00000121239 375 ntBASIC13.4□□□□□ -0.26
Nkx3-1P97436 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Nkx3-1P97436 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms