Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.13■□□□□ 0.33
Hmgb1P63158 Gm27742-201ENSMUST00000184667 60 ntBASIC17.13■□□□□ 0.33
Hmgb1P63158 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Gm7367-201ENSMUST00000057611 492 ntBASIC17.13■□□□□ 0.33
Hmgb1P63158 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.13■□□□□ 0.33
Hmgb1P63158 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.13■□□□□ 0.33
Hmgb1P63158 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.13■□□□□ 0.33
Hmgb1P63158 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Hmgb1P63158 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Hmgb1P63158 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb1P63158 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb1P63158 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb1P63158 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.11■□□□□ 0.33
Hmgb1P63158 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.11■□□□□ 0.33
Hmgb1P63158 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.11■□□□□ 0.33
Hmgb1P63158 Gm13836-201ENSMUST00000121159 501 ntBASIC17.11■□□□□ 0.33
Hmgb1P63158 Olfr129-201ENSMUST00000122318 993 ntBASIC17.11■□□□□ 0.33
Hmgb1P63158 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb1P63158 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Mir7071-201ENSMUST00000184847 69 ntBASIC17.1■□□□□ 0.33
Hmgb1P63158 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.1■□□□□ 0.33
Hmgb1P63158 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.1■□□□□ 0.33
Hmgb1P63158 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb1P63158 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms