Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RaraP11416 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RaraP11416 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RaraP11416 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
RaraP11416 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.84■□□□□ 0.29
RaraP11416 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RaraP11416 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
RaraP11416 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RaraP11416 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC16.84■□□□□ 0.29
RaraP11416 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
RaraP11416 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
RaraP11416 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
RaraP11416 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.84■□□□□ 0.29
RaraP11416 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC16.84■□□□□ 0.29
RaraP11416 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RaraP11416 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
RaraP11416 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
RaraP11416 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
RaraP11416 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
RaraP11416 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
RaraP11416 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
RaraP11416 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
RaraP11416 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
RaraP11416 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
RaraP11416 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Mir3081-201ENSMUST00000175305 84 ntBASIC16.83■□□□□ 0.28
RaraP11416 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
RaraP11416 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
RaraP11416 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.83■□□□□ 0.28
RaraP11416 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.82■□□□□ 0.28
RaraP11416 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
RaraP11416 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.82■□□□□ 0.28
RaraP11416 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm8825-201ENSMUST00000182565 998 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm4518-201ENSMUST00000182638 718 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.82■□□□□ 0.28
RaraP11416 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC16.82■□□□□ 0.28
RaraP11416 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.82■□□□□ 0.28
RaraP11416 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.82■□□□□ 0.28
RaraP11416 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.82■□□□□ 0.28
RaraP11416 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.82■□□□□ 0.28
RaraP11416 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.82■□□□□ 0.28
RaraP11416 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.82■□□□□ 0.28
RaraP11416 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.82■□□□□ 0.28
RaraP11416 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RaraP11416 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms