Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.11□□□□□ -0.47
Hoxd3P09027 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hoxd3P09027 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC12.1□□□□□ -0.47
Hoxd3P09027 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Hoxd3P09027 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hoxd3P09027 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm13036-201ENSMUST00000117799 748 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC12.09□□□□□ -0.47
Hoxd3P09027 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm19164-201ENSMUST00000210667 640 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Gm5364-201ENSMUST00000216789 889 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC12.09□□□□□ -0.47
Hoxd3P09027 AC159106.1-201ENSMUST00000224421 690 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Hoxd3P09027 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hoxd3P09027 Wnt10b-206ENSMUST00000228546 2709 ntBASIC12.09□□□□□ -0.47
Hoxd3P09027 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Hoxd3P09027 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
Hoxd3P09027 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms