Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.93□□□□□ -0.18
Col5a1O88207 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC13.93□□□□□ -0.18
Col5a1O88207 Gm27430-201ENSMUST00000184585 107 ntBASIC13.93□□□□□ -0.18
Col5a1O88207 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Gm44333-201ENSMUST00000197168 107 ntBASIC13.93□□□□□ -0.18
Col5a1O88207 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.93□□□□□ -0.18
Col5a1O88207 Gm10154-201ENSMUST00000084445 354 ntBASIC13.93□□□□□ -0.18
Col5a1O88207 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Col5a1O88207 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Col5a1O88207 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col5a1O88207 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Mir7684-201ENSMUST00000183858 60 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 Gm5779-201ENSMUST00000218467 910 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Col5a1O88207 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col5a1O88207 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Gm25287-201ENSMUST00000103846 110 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 Gm22918-201ENSMUST00000103855 110 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col5a1O88207 Gm7488-201ENSMUST00000117148 684 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Gm24158-201ENSMUST00000175263 71 ntBASIC13.92□□□□□ -0.18
Col5a1O88207 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.92□□□□□ -0.18
Col5a1O88207 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col5a1O88207 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC13.91□□□□□ -0.18
Col5a1O88207 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Gm15653-201ENSMUST00000119247 907 ntBASIC13.91□□□□□ -0.18
Col5a1O88207 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.91□□□□□ -0.18
Col5a1O88207 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Col5a1O88207 Gm9794-201ENSMUST00000202370 423 ntBASIC13.91□□□□□ -0.18
Col5a1O88207 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.91□□□□□ -0.18
Col5a1O88207 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.91□□□□□ -0.18
Col5a1O88207 Gm25857-201ENSMUST00000082788 129 ntBASIC13.91□□□□□ -0.18
Col5a1O88207 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col5a1O88207 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Col5a1O88207 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Col5a1O88207 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC13.9□□□□□ -0.18
Col5a1O88207 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.9□□□□□ -0.18
Col5a1O88207 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Gm6473-201ENSMUST00000188572 1210 ntBASIC13.9□□□□□ -0.18
Col5a1O88207 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Col5a1O88207 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col5a1O88207 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms