Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Hmgb3O54879 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC12.93□□□□□ -0.34
Hmgb3O54879 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Hmgb3O54879 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC12.93□□□□□ -0.34
Hmgb3O54879 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Phf7-203ENSMUST00000226565 1971 ntBASIC12.92□□□□□ -0.34
Hmgb3O54879 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Gm38027-201ENSMUST00000192315 235 ntBASIC12.92□□□□□ -0.34
Hmgb3O54879 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Hmgb3O54879 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Hmgb3O54879 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC12.91□□□□□ -0.34
Hmgb3O54879 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Gm7791-201ENSMUST00000219066 539 ntBASIC12.91□□□□□ -0.34
Hmgb3O54879 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC12.91□□□□□ -0.34
Hmgb3O54879 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 AC154855.1-201ENSMUST00000227353 1458 ntBASIC12.91□□□□□ -0.34
Hmgb3O54879 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Hmgb3O54879 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms