Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm26461-201ENSMUST00000175064 290 ntBASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Scn4aQ9ER60 Gm38241-201ENSMUST00000192641 898 ntBASIC21.08■□□□□ 0.97
Scn4aQ9ER60 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC21.08■□□□□ 0.97
Scn4aQ9ER60 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn4aQ9ER60 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Scn4aQ9ER60 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Scn4aQ9ER60 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Gm28911-201ENSMUST00000188837 117 ntBASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn4aQ9ER60 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Gm19220-201ENSMUST00000222682 803 ntBASIC21.06■□□□□ 0.96
Scn4aQ9ER60 AC149588.3-201ENSMUST00000227515 150 ntBASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Scn4aQ9ER60 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 AC154687.2-201ENSMUST00000223853 640 ntBASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Scn4aQ9ER60 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 AC131743.5-201ENSMUST00000220775 1618 ntBASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Gm12341-201ENSMUST00000119724 503 ntBASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms