Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Gm20553-201ENSMUST00000204205 844 ntBASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cpsf1Q9EPU4 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cpsf1Q9EPU4 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC21.32■■□□□ 1
Cpsf1Q9EPU4 AC164567.1-201ENSMUST00000219185 960 ntBASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cpsf1Q9EPU4 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Mir1895-201ENSMUST00000122615 79 ntBASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Auts2-212ENSMUST00000178555 309 ntBASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Celf4-206ENSMUST00000224553 1729 ntBASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Prob1-201ENSMUST00000097619 3021 ntBASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cpsf1Q9EPU4 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cpsf1Q9EPU4 Gm9385-201ENSMUST00000117563 472 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Gm17271-201ENSMUST00000165535 355 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 AC155252.2-201ENSMUST00000226946 680 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Gm43767-201ENSMUST00000198933 381 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cpsf1Q9EPU4 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC21.29■■□□□ 1
Cpsf1Q9EPU4 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cpsf1Q9EPU4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Cpsf1Q9EPU4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cpsf1Q9EPU4 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms