Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC19.2■□□□□ 0.66
RtcbQ99LF4 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
RtcbQ99LF4 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.19■□□□□ 0.66
RtcbQ99LF4 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RtcbQ99LF4 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RtcbQ99LF4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.18■□□□□ 0.66
RtcbQ99LF4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.18■□□□□ 0.66
RtcbQ99LF4 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Gm27306-201ENSMUST00000183970 107 ntBASIC19.18■□□□□ 0.66
RtcbQ99LF4 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RtcbQ99LF4 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.18■□□□□ 0.66
RtcbQ99LF4 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
RtcbQ99LF4 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Wdyhv1-203ENSMUST00000226889 394 ntBASIC19.17■□□□□ 0.66
RtcbQ99LF4 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RtcbQ99LF4 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Gm6415-201ENSMUST00000118488 348 ntBASIC19.16■□□□□ 0.66
RtcbQ99LF4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC19.16■□□□□ 0.66
RtcbQ99LF4 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC19.16■□□□□ 0.66
RtcbQ99LF4 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC19.15■□□□□ 0.66
RtcbQ99LF4 Gm14722-201ENSMUST00000118943 689 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms