Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim56Q80VI1 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Gm5253-201ENSMUST00000187104 1025 ntBASIC18.36■□□□□ 0.53
Trim56Q80VI1 Gm9682-201ENSMUST00000197505 556 ntBASIC18.36■□□□□ 0.53
Trim56Q80VI1 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim56Q80VI1 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim56Q80VI1 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 AC084391.1-201ENSMUST00000200651 141 ntBASIC18.35■□□□□ 0.53
Trim56Q80VI1 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim56Q80VI1 AC122901.1-201ENSMUST00000214203 1790 ntBASIC18.35■□□□□ 0.53
Trim56Q80VI1 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim56Q80VI1 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gm14722-201ENSMUST00000118943 689 ntBASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gm5364-201ENSMUST00000216789 889 ntBASIC18.34■□□□□ 0.53
Trim56Q80VI1 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim56Q80VI1 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim56Q80VI1 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.33■□□□□ 0.52
Trim56Q80VI1 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Gm18489-201ENSMUST00000172565 551 ntBASIC18.33■□□□□ 0.52
Trim56Q80VI1 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Gm18206-201ENSMUST00000207027 926 ntBASIC18.33■□□□□ 0.52
Trim56Q80VI1 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Psmb5-202ENSMUST00000227257 622 ntBASIC18.33■□□□□ 0.52
Trim56Q80VI1 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms