Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Gm38327-201ENSMUST00000195852 1755 ntBASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Sh3rf1Q69ZI1 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Sh3rf1Q69ZI1 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm28659-201ENSMUST00000188013 759 ntBASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm36967-201ENSMUST00000193814 266 ntBASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Sh3rf1Q69ZI1 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Gm12895-201ENSMUST00000122214 226 ntBASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Sh3rf1Q69ZI1 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Gm44450-201ENSMUST00000199528 114 ntBASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Gm43347-201ENSMUST00000200226 580 ntBASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Gm5864-201ENSMUST00000202263 970 ntBASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Birc2-201ENSMUST00000054878 378 ntBASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms