Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm15427-201ENSMUST00000117288 531 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Col6a1Q04857 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
Col6a1Q04857 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm4518-201ENSMUST00000182638 718 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.18■□□□□ 0.34
Col6a1Q04857 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.18■□□□□ 0.34
Col6a1Q04857 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a1Q04857 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Gm25948-201ENSMUST00000175334 112 ntBASIC17.17■□□□□ 0.34
Col6a1Q04857 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 AC140375.2-201ENSMUST00000225283 584 ntBASIC17.17■□□□□ 0.34
Col6a1Q04857 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.17■□□□□ 0.34
Col6a1Q04857 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col6a1Q04857 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a1Q04857 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.17■□□□□ 0.34
Col6a1Q04857 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a1Q04857 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col6a1Q04857 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Col6a1Q04857 Gm23547-201ENSMUST00000158210 271 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Gm45747-201ENSMUST00000212203 999 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a1Q04857 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 CT025535.1-201ENSMUST00000227172 491 ntBASIC17.16■□□□□ 0.34
Col6a1Q04857 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms