Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col8a1Q00780 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Gm27622-201ENSMUST00000183779 60 ntBASIC13.28□□□□□ -0.28
Col8a1Q00780 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC13.28□□□□□ -0.28
Col8a1Q00780 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.28□□□□□ -0.28
Col8a1Q00780 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.28□□□□□ -0.28
Col8a1Q00780 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.28□□□□□ -0.28
Col8a1Q00780 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col8a1Q00780 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Col8a1Q00780 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col8a1Q00780 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.27□□□□□ -0.29
Col8a1Q00780 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Gm45612-201ENSMUST00000211320 160 ntBASIC13.27□□□□□ -0.29
Col8a1Q00780 Gm7787-201ENSMUST00000216858 688 ntBASIC13.27□□□□□ -0.29
Col8a1Q00780 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.27□□□□□ -0.29
Col8a1Q00780 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.27□□□□□ -0.29
Col8a1Q00780 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Col8a1Q00780 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col8a1Q00780 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm5177-201ENSMUST00000183092 997 ntBASIC13.26□□□□□ -0.29
Col8a1Q00780 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm43125-201ENSMUST00000201724 730 ntBASIC13.26□□□□□ -0.29
Col8a1Q00780 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Gm45774-201ENSMUST00000211992 2665 ntBASIC13.26□□□□□ -0.29
Col8a1Q00780 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col8a1Q00780 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Col8a1Q00780 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms