Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.46□□□□□ -0.25
Nkx3-1P97436 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.46□□□□□ -0.25
Nkx3-1P97436 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Nkx3-1P97436 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Nkx3-1P97436 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Nkx3-1P97436 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Nkx3-1P97436 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Gm44492-201ENSMUST00000197012 141 ntBASIC13.45□□□□□ -0.26
Nkx3-1P97436 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.45□□□□□ -0.26
Nkx3-1P97436 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.45□□□□□ -0.26
Nkx3-1P97436 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Nkx3-1P97436 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Grk6-207ENSMUST00000225925 2769 ntBASIC13.44□□□□□ -0.26
Nkx3-1P97436 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Nkx3-1P97436 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.43□□□□□ -0.26
Nkx3-1P97436 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Nkx3-1P97436 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms