Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.67■□□□□ 0.58
Rfx1P48377 Gm37722-201ENSMUST00000193757 208 ntBASIC18.67■□□□□ 0.58
Rfx1P48377 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC18.67■□□□□ 0.58
Rfx1P48377 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx1P48377 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC18.67■□□□□ 0.58
Rfx1P48377 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.66■□□□□ 0.58
Rfx1P48377 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Rfx1P48377 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.66■□□□□ 0.58
Rfx1P48377 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Rfx1P48377 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx1P48377 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Gm45605-201ENSMUST00000210265 4269 ntBASIC18.65■□□□□ 0.58
Rfx1P48377 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.65■□□□□ 0.58
Rfx1P48377 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.65■□□□□ 0.58
Rfx1P48377 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Rfx1P48377 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rfx1P48377 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx1P48377 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Rfx1P48377 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
Rfx1P48377 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rfx1P48377 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Rfx1P48377 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Rfx1P48377 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Rfx1P48377 Gm10052-201ENSMUST00000168019 960 ntBASIC18.64■□□□□ 0.57
Rfx1P48377 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Gm7889-201ENSMUST00000185591 958 ntBASIC18.64■□□□□ 0.57
Rfx1P48377 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Rfx1P48377 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Gm7729-201ENSMUST00000050143 801 ntBASIC18.64■□□□□ 0.57
Rfx1P48377 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.64■□□□□ 0.57
Rfx1P48377 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rfx1P48377 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rfx1P48377 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Rfx1P48377 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx1P48377 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rfx1P48377 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.63■□□□□ 0.57
Rfx1P48377 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.63■□□□□ 0.57
Rfx1P48377 Gm44430-201ENSMUST00000203376 995 ntBASIC18.63■□□□□ 0.57
Rfx1P48377 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.63■□□□□ 0.57
Rfx1P48377 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Rfx1P48377 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx1P48377 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.63■□□□□ 0.57
Rfx1P48377 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms