Protein–RNA interactions for Protein: P02831

Hoxa3, Homeobox protein Hox-A3, mousemouse

Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa3P02831 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.07□□□□□ -0.32
Hoxa3P02831 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm5712-201ENSMUST00000199748 1043 ntBASIC13.07□□□□□ -0.32
Hoxa3P02831 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Hoxa3P02831 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hoxa3P02831 AC133083.1-201ENSMUST00000221736 2209 ntBASIC13.07□□□□□ -0.32
Hoxa3P02831 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.06□□□□□ -0.32
Hoxa3P02831 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Hoxa3P02831 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 AC154527.4-201ENSMUST00000224364 1667 ntBASIC13.05□□□□□ -0.32
Hoxa3P02831 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC13.05□□□□□ -0.32
Hoxa3P02831 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Hoxa3P02831 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms