Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
H2afb1S4R1E0 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
H2afb1S4R1E0 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
H2afb1S4R1E0 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
H2afb1S4R1E0 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.18□□□□□ -0.14
H2afb1S4R1E0 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms