Protein–RNA interactions for Protein: Q9ES00

Ube4b, Ubiquitin conjugation factor E4 B, mousemouse

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4bQ9ES00 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Gm13168-201ENSMUST00000121771 632 ntBASIC15.06■□□□□ 0
Ube4bQ9ES00 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.06■□□□□ 0
Ube4bQ9ES00 Gm45504-201ENSMUST00000211407 2107 ntBASIC15.06■□□□□ 0
Ube4bQ9ES00 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ube4bQ9ES00 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ube4bQ9ES00 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.06■□□□□ 0
Ube4bQ9ES00 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Ube4bQ9ES00 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube4bQ9ES00 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC15.05■□□□□ 0
Ube4bQ9ES00 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Ube4bQ9ES00 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ 0
Ube4bQ9ES00 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ube4bQ9ES00 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.05■□□□□ -0
Ube4bQ9ES00 Gm8520-201ENSMUST00000186517 868 ntBASIC15.05■□□□□ -0
Ube4bQ9ES00 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC15.05■□□□□ -0
Ube4bQ9ES00 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Ube4bQ9ES00 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Ube4bQ9ES00 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
Ube4bQ9ES00 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.04■□□□□ -0
Ube4bQ9ES00 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Gm12134-201ENSMUST00000122109 520 ntBASIC15.04■□□□□ -0
Ube4bQ9ES00 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.04■□□□□ -0
Ube4bQ9ES00 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ube4bQ9ES00 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ube4bQ9ES00 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.04■□□□□ -0
Ube4bQ9ES00 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Gm37025-201ENSMUST00000195159 829 ntBASIC15.03■□□□□ -0
Ube4bQ9ES00 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ube4bQ9ES00 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.03■□□□□ -0
Ube4bQ9ES00 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms