Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 AC159747.1-201ENSMUST00000219903 265 ntBASIC21.14■□□□□ 0.97
Scn4aQ9ER60 CT009510.1-201ENSMUST00000227972 270 ntBASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn4aQ9ER60 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Gm44974-201ENSMUST00000206387 1279 ntBASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Gm16476-201ENSMUST00000221544 139 ntBASIC21.13■□□□□ 0.97
Scn4aQ9ER60 AC155252.1-201ENSMUST00000226462 1208 ntBASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn4aQ9ER60 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Gm14660-201ENSMUST00000119809 575 ntBASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Mir1894-201ENSMUST00000122802 81 ntBASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC21.12■□□□□ 0.97
Scn4aQ9ER60 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm29310-201ENSMUST00000185468 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21825-201ENSMUST00000185728 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm29109-201ENSMUST00000185895 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21896-201ENSMUST00000186520 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21873-201ENSMUST00000186728 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21794-201ENSMUST00000187056 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21880-201ENSMUST00000187275 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21826-201ENSMUST00000187451 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21198-201ENSMUST00000188393 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21749-201ENSMUST00000189343 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21901-201ENSMUST00000189568 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm29424-201ENSMUST00000189716 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm28599-201ENSMUST00000189838 694 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21867-201ENSMUST00000189917 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm29269-201ENSMUST00000190087 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21722-201ENSMUST00000190153 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm28423-201ENSMUST00000190701 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21899-201ENSMUST00000190745 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21910-201ENSMUST00000191163 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21849-201ENSMUST00000191571 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm28678-201ENSMUST00000191593 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm20910-201ENSMUST00000193268 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm21871-201ENSMUST00000194621 696 ntBASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Scn4aQ9ER60 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Rn7s1-201ENSMUST00000174924 300 ntBASIC21.1■□□□□ 0.97
Scn4aQ9ER60 Rn7s2-201ENSMUST00000175032 300 ntBASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms